Detailed information of SNP:
|
SNP ID:
sf0903734583(Gbrowse)
Chromosome: chr09 Position: 3734583 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 63.94% | 36.06% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 497 | 21.93% | 78.07% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903734583 | A->G | INTERGENIC | None |