Detailed information of SNP:
|
SNP ID:
sf0903735728(Gbrowse)
Chromosome: chr09 Position: 3735728 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 55.24% | 44.76% |
| All Indica | 796 | 93.72% | 6.28% |
| All Japonica | 496 | 0.00% | 100.00% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903735728 | G->A | INTERGENIC | None |