Detailed information of SNP:
|
SNP ID:
sf0903763154(Gbrowse)
Chromosome: chr09 Position: 3763154 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 61.30% | 38.70% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903763154 | C->A | LOC_Os09g07510(LOC_Os09g07510.2) | INTRON |
| sf0903763154 | C->A | LOC_Os09g07510(LOC_Os09g07510.3) | INTRON |
| sf0903763154 | C->A | LOC_Os09g07510(LOC_Os09g07510.1) | INTRON |