Detailed information of SNP:
|
SNP ID:
sf0903778005(Gbrowse)
Chromosome: chr09 Position: 3778005 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 56.99% | 43.01% |
| All Indica | 782 | 90.03% | 9.97% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 365 | 89.59% | 10.41% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 205 | 87.32% | 12.68% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903778005 | A->G | LOC_Os09g07540(LOC_Os09g07540.1) | INTRON |