Detailed information of SNP:
|
SNP ID:
sf0903779051(Gbrowse)
Chromosome: chr09 Position: 3779051 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 94.16% | 5.84% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 484 | 84.50% | 15.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 88 | 29.55% | 70.45% |
| Japonica Intermediate | 62 | 85.48% | 14.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903779051 | C->T | LOC_Os09g07540(LOC_Os09g07540.1) | INTRON |