Detailed information of SNP:
|
SNP ID:
sf0903782463(Gbrowse)
Chromosome: chr09 Position: 3782463 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1322 | 92.13% | 7.87% |
| All Indica | 707 | 85.43% | 14.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 331 | 91.54% | 8.46% |
| Indica II | 192 | 79.69% | 20.31% |
| Indica Intermediate | 184 | 80.43% | 19.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903782463 | C->T | INTERGENIC | None |