Detailed information of SNP:
|
SNP ID:
sf0903869635(Gbrowse)
Chromosome: chr09 Position: 3869635 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 89.99% | 10.01% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 476 | 76.47% | 23.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 321 | 96.88% | 3.12% |
| Tropical Japonica | 89 | 16.85% | 83.15% |
| Japonica Intermediate | 66 | 57.58% | 42.42% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903869635 | C->T | INTERGENIC | None |