Detailed information of SNP:
|
SNP ID:
sf0903983961(Gbrowse)
Chromosome: chr09 Position: 3983961 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 61.46% | 38.54% |
| All Indica | 795 | 94.72% | 5.28% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903983961 | A->C | LOC_Os09g07850(LOC_Os09g07850.1) | INTRON |