Detailed information of SNP:
|
SNP ID:
sf0903999622(Gbrowse)
Chromosome: chr09 Position: 3999622 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 53.06% | 46.94% |
| All Indica | 780 | 27.69% | 72.31% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 60 | 18.33% | 81.67% |
| Indica I | 373 | 15.82% | 84.18% |
| Indica II | 201 | 41.29% | 58.71% |
| Indica Intermediate | 206 | 35.92% | 64.08% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903999622 | A->G | LOC_Os09g07870(LOC_Os09g07870.1) | Non-Synonymous SNP |