Detailed information of SNP:
|
SNP ID:
sf0904006458(Gbrowse)
Chromosome: chr09 Position: 4006458 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 55.46% | 44.54% |
| All Indica | 759 | 27.67% | 72.33% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 28.57% | 71.43% |
| Indica I | 357 | 28.85% | 71.15% |
| Indica II | 206 | 22.82% | 77.18% |
| Indica Intermediate | 196 | 30.61% | 69.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904006458 | T->C | LOC_Os09g07880(LOC_Os09g07880.1) | Non-Synonymous SNP |