Detailed information of SNP:
|
SNP ID:
sf0904006553(Gbrowse)
Chromosome: chr09 Position: 4006553 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 51.36% | 48.64% |
| All Indica | 776 | 79.64% | 20.36% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 364 | 77.47% | 22.53% |
| Indica II | 211 | 83.89% | 16.11% |
| Indica Intermediate | 201 | 79.10% | 20.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904006553 | T->C | LOC_Os09g07880(LOC_Os09g07880.1) | Synonymous |