Detailed information of SNP:
|
SNP ID:
sf0904076185(Gbrowse)
Chromosome: chr09 Position: 4076185 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 88.75% | 11.25% |
| All Indica | 764 | 87.96% | 12.04% |
| All Japonica | 477 | 89.10% | 10.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 94.79% | 5.21% |
| Indica II | 203 | 80.30% | 19.70% |
| Indica Intermediate | 196 | 83.16% | 16.84% |
| Temperate Japonica | 316 | 84.81% | 15.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904076185 | G->T | INTERGENIC | None |