Detailed information of SNP:
|
SNP ID:
sf0904122337(Gbrowse)
Chromosome: chr09 Position: 4122337 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 53.92% | 46.08% |
| All Indica | 788 | 81.09% | 18.91% |
| All Japonica | 494 | 4.45% | 95.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 89.49% | 10.51% |
| Indica II | 209 | 72.25% | 27.75% |
| Indica Intermediate | 208 | 75.00% | 25.00% |
| Temperate Japonica | 332 | 6.02% | 93.98% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904122337 | T->C | INTERGENIC | None |