Detailed information of SNP:
|
SNP ID:
sf0904123928(Gbrowse)
Chromosome: chr09 Position: 4123928 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 58.45% | 41.55% |
| All Indica | 780 | 87.56% | 12.44% |
| All Japonica | 495 | 7.07% | 92.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 91.03% | 8.97% |
| Indica II | 208 | 85.58% | 14.42% |
| Indica Intermediate | 204 | 83.33% | 16.67% |
| Temperate Japonica | 334 | 8.38% | 91.62% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904123928 | G->T | INTERGENIC | None |