Detailed information of SNP:
|
SNP ID:
sf0904128441(Gbrowse)
Chromosome: chr09 Position: 4128441 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 95.96% | 4.04% |
| All Indica | 796 | 98.49% | 1.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 30.16% | 69.84% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904128441 | C->A | LOC_Os09g08020(LOC_Os09g08020.1) | Non-Synonymous SNP |