Detailed information of SNP:
|
SNP ID:
sf0904128442(Gbrowse)
Chromosome: chr09 Position: 4128442 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 50.61% | 49.39% |
| All Indica | 772 | 78.11% | 21.89% |
| All Japonica | 491 | 2.65% | 97.35% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 362 | 83.98% | 16.02% |
| Indica II | 204 | 70.59% | 29.41% |
| Indica Intermediate | 206 | 75.24% | 24.76% |
| Temperate Japonica | 329 | 2.74% | 97.26% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904128442 | C->A | LOC_Os09g08020(LOC_Os09g08020.1) | Synonymous |