Detailed information of SNP:
|
SNP ID:
sf0904145189(Gbrowse)
Chromosome: chr09 Position: 4145189 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 92.29% | 7.71% |
| All Indica | 794 | 98.49% | 1.51% |
| All Japonica | 497 | 81.89% | 18.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904145189 | G->A | INTERGENIC | None |