Detailed information of SNP:
|
SNP ID:
sf0904152122(Gbrowse)
Chromosome: chr09 Position: 4152122 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1285 | 93.93% | 6.07% |
| All Indica | 682 | 90.47% | 9.53% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 55 | 89.09% | 10.91% |
| Indica I | 329 | 93.31% | 6.69% |
| Indica II | 171 | 85.38% | 14.62% |
| Indica Intermediate | 182 | 90.11% | 9.89% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904152122 | C->T | INTERGENIC | None |