Detailed information of SNP:
|
SNP ID:
sf0904231954(Gbrowse)
Chromosome: chr09 Position: 4231954 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 60.09% | 39.91% |
| All Indica | 730 | 29.86% | 70.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 353 | 13.88% | 86.12% |
| Indica II | 183 | 53.55% | 46.45% |
| Indica Intermediate | 194 | 36.60% | 63.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904231954 | G->A | INTERGENIC | None |