Detailed information of SNP:
|
SNP ID:
sf0904235778(Gbrowse)
Chromosome: chr09 Position: 4235778 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 66.69% | 33.31% |
| All Indica | 791 | 91.78% | 8.22% |
| All Japonica | 482 | 19.71% | 80.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 206 | 89.81% | 10.19% |
| Temperate Japonica | 322 | 25.16% | 74.84% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904235778 | T->C | LOC_Os09g08180(LOC_Os09g08180.1) | Non-Synonymous SNP |