Detailed information of SNP:
|
SNP ID:
sf0904243136(Gbrowse)
Chromosome: chr09 Position: 4243136 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 68.68% | 31.32% |
| All Indica | 796 | 97.24% | 2.76% |
| All Japonica | 492 | 17.28% | 82.72% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 333 | 21.02% | 78.98% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 65 | 18.46% | 81.54% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904243136 | T->C | LOC_Os09g08180(LOC_Os09g08180.1) | Non-Synonymous SNP |