Detailed information of SNP:
|
SNP ID:
sf0904255580(Gbrowse)
Chromosome: chr09 Position: 4255580 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 62.35% | 37.65% |
| All Indica | 750 | 34.53% | 65.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 345 | 20.00% | 80.00% |
| Indica II | 206 | 56.80% | 43.20% |
| Indica Intermediate | 199 | 36.68% | 63.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904255580 | T->G | INTERGENIC | None |