Detailed information of SNP:
|
SNP ID:
sf0904277800(Gbrowse)
Chromosome: chr09 Position: 4277800 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 84.86% | 15.14% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 487 | 59.96% | 40.04% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 68.66% | 31.34% |
| Tropical Japonica | 85 | 25.88% | 74.12% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904277800 | C->T | INTERGENIC | None |