Detailed information of SNP:
|
SNP ID:
sf0904310002(Gbrowse)
Chromosome: chr09 Position: 4310002 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 60.69% | 39.31% |
| All Indica | 792 | 94.82% | 5.18% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904310002 | T->C | LOC_Os09g08340(LOC_Os09g08340.1) | INTRON |