Detailed information of SNP:
|
SNP ID:
sf0904343784(Gbrowse)
Chromosome: chr09 Position: 4343784 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 96.02% | 3.98% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 485 | 89.90% | 10.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 45.88% | 54.12% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904343784 | A->G | LOC_Os09g08370(LOC_Os09g08370.3) | INTRON |
| sf0904343784 | A->G | LOC_Os09g08370(LOC_Os09g08370.2) | INTRON |
| sf0904343784 | A->G | LOC_Os09g08370(LOC_Os09g08370.1) | INTRON |