Detailed information of SNP:
|
SNP ID:
sf0904347676(Gbrowse)
Chromosome: chr09 Position: 4347676 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1311 | 54.08% | 45.92% |
| All Indica | 783 | 29.89% | 70.11% |
| All Japonica | 443 | 95.03% | 4.97% |
| Aus | 32 | 56.25% | 43.75% |
| Indica I | 375 | 16.27% | 83.73% |
| Indica II | 198 | 47.98% | 52.02% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 49 | 85.71% | 14.29% |
| Japonica Intermediate | 61 | 75.41% | 24.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904347676 | G->T | INTERGENIC | None |