Detailed information of SNP:
|
SNP ID:
sf0904355037(Gbrowse)
Chromosome: chr09 Position: 4355037 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 83.83% | 16.17% |
| All Indica | 796 | 76.01% | 23.99% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 211 | 66.82% | 33.18% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904355037 | G->A | INTERGENIC | None |