Detailed information of SNP:
|
SNP ID:
sf0904365177(Gbrowse)
Chromosome: chr09 Position: 4365177 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.93% | 37.07% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904365177 | T->C | INTERGENIC | None |