Detailed information of SNP:
|
SNP ID:
sf0904378272(Gbrowse)
Chromosome: chr09 Position: 4378272 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 70.41% | 29.59% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 21.93% | 78.07% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904378272 | T->C | INTERGENIC | None |