Detailed information of SNP:
|
SNP ID:
sf0904454249(Gbrowse)
Chromosome: chr09 Position: 4454249 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 79.45% | 20.55% |
| All Indica | 796 | 66.46% | 33.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 65.68% | 34.32% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904454249 | A->T | LOC_Os09g08540(LOC_Os09g08540.1) | INTRON |