Detailed information of SNP:
|
SNP ID:
sf0904505888(Gbrowse)
Chromosome: chr09 Position: 4505888 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 96.10% | 3.90% |
| All Indica | 796 | 98.49% | 1.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 36.07% | 63.93% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904505888 | G->A | INTERGENIC | None |