Detailed information of SNP:
|
SNP ID:
sf0904577294(Gbrowse)
Chromosome: chr09 Position: 4577294 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 54.91% | 45.09% |
| All Indica | 767 | 20.73% | 79.27% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 28.65% | 71.35% |
| Indica II | 213 | 20.19% | 79.81% |
| Indica Intermediate | 205 | 7.80% | 92.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904577294 | C->T | LOC_Os09g08710(LOC_Os09g08710.3) | Synonymous |
| sf0904577294 | C->T | LOC_Os09g08710(LOC_Os09g08710.1) | INTRON |
| sf0904577294 | C->T | LOC_Os09g08710(LOC_Os09g08710.2) | Synonymous |