Detailed information of SNP:
|
SNP ID:
sf0904627790(Gbrowse)
Chromosome: chr09 Position: 4627790 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 67.69% | 32.31% |
| All Indica | 796 | 82.41% | 17.59% |
| All Japonica | 488 | 42.21% | 57.79% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 68.90% | 31.10% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 328 | 28.35% | 71.65% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904627790 | C->T | LOC_Os09g08770(LOC_Os09g08770.1) | Synonymous |