Detailed information of SNP:
|
SNP ID:
sf0904628329(Gbrowse)
Chromosome: chr09 Position: 4628329 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 95.98% | 4.02% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 474 | 89.66% | 10.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 76 | 55.26% | 44.74% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904628329 | C->G | INTERGENIC | None |