Detailed information of SNP:
|
SNP ID:
sf0904630897(Gbrowse)
Chromosome: chr09 Position: 4630897 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1292 | 89.86% | 10.14% |
| All Indica | 699 | 84.84% | 15.16% |
| All Japonica | 476 | 96.64% | 3.36% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 330 | 82.73% | 17.27% |
| Indica II | 187 | 88.24% | 11.76% |
| Indica Intermediate | 182 | 85.16% | 14.84% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 79 | 86.08% | 13.92% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904630897 | T->C | LOC_Os09g08780(LOC_Os09g08780.1) | Non-Synonymous SNP |