Detailed information of SNP:
|
SNP ID:
sf0904642511(Gbrowse)
Chromosome: chr09 Position: 4642511 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1214 | 59.39% | 40.61% |
| All Indica | 603 | 28.52% | 71.48% |
| All Japonica | 494 | 92.31% | 7.69% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 241 | 25.73% | 74.27% |
| Indica II | 183 | 34.43% | 65.57% |
| Indica Intermediate | 179 | 26.26% | 73.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 69.23% | 30.77% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904642511 | T->G | INTERGENIC | None |