Detailed information of SNP:
|
SNP ID:
sf0904649982(Gbrowse)
Chromosome: chr09 Position: 4649982 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.82% | 41.18% |
| All Indica | 798 | 84.34% | 15.66% |
| All Japonica | 497 | 21.93% | 78.07% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 80.21% | 19.79% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904649982 | C->A | INTERGENIC | None |