Detailed information of SNP:
|
SNP ID:
sf0904657178(Gbrowse)
Chromosome: chr09 Position: 4657178 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 94.54% | 5.46% |
| All Indica | 757 | 90.75% | 9.25% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 366 | 92.08% | 7.92% |
| Indica II | 196 | 91.33% | 8.67% |
| Indica Intermediate | 195 | 87.69% | 12.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904657178 | G->T | INTERGENIC | None |