Detailed information of SNP:
|
SNP ID:
sf0904667868(Gbrowse)
Chromosome: chr09 Position: 4667868 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 96.80% | 3.20% |
| All Indica | 791 | 98.10% | 1.90% |
| All Japonica | 495 | 95.76% | 4.24% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904667868 | C->T | LOC_Os09g08850(LOC_Os09g08850.1) | SNPs that introduce stop codons |