Detailed information of SNP:
|
SNP ID:
sf0904679838(Gbrowse)
Chromosome: chr09 Position: 4679838 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 97.53% | 2.47% |
| All Indica | 796 | 97.74% | 2.26% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904679838 | G->A | INTERGENIC | None |