Detailed information of SNP:
|
SNP ID:
sf0904681424(Gbrowse)
Chromosome: chr09 Position: 4681424 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 94.51% | 5.49% |
| All Indica | 739 | 91.34% | 8.66% |
| All Japonica | 489 | 99.39% | 0.61% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 332 | 87.05% | 12.95% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 197 | 93.40% | 6.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904681424 | C->T | LOC_Os09g08860(LOC_Os09g08860.1) | Non-Synonymous SNP |