Detailed information of SNP:
|
SNP ID:
sf0904706656(Gbrowse)
Chromosome: chr09 Position: 4706656 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 80.62% | 19.38% |
| All Indica | 718 | 65.18% | 34.82% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 322 | 62.73% | 37.27% |
| Indica II | 205 | 71.22% | 28.78% |
| Indica Intermediate | 191 | 62.83% | 37.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904706656 | T->C | LOC_Os09g08890(LOC_Os09g08890.1) | UTR_5_PRIME |