Detailed information of SNP:
|
SNP ID:
sf0904739928(Gbrowse)
Chromosome: chr09 Position: 4739928 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 94.11% | 5.89% |
| All Indica | 761 | 89.36% | 10.64% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 349 | 89.68% | 10.32% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 201 | 81.59% | 18.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904739928 | T->G | INTERGENIC | None |