Detailed information of SNP:
|
SNP ID:
sf0904766635(Gbrowse)
Chromosome: chr09 Position: 4766635 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.50% | 16.50% |
| All Indica | 798 | 86.72% | 13.28% |
| All Japonica | 497 | 79.28% | 20.72% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904766635 | C->T | INTERGENIC | None |