Detailed information of SNP:
|
SNP ID:
sf0904777371(Gbrowse)
Chromosome: chr09 Position: 4777371 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 81.89% | 18.11% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 78.67% | 21.33% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904777371 | C->G | LOC_Os09g08990(LOC_Os09g08990.1) | Synonymous |