Detailed information of SNP:
|
SNP ID:
sf0904832561(Gbrowse)
Chromosome: chr09 Position: 4832561 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.09% | 30.91% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 495 | 42.63% | 57.37% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 73.87% | 26.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 29.85% | 70.15% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904832561 | C->T | INTERGENIC | None |