Detailed information of SNP:
|
SNP ID:
sf0904832940(Gbrowse)
Chromosome: chr09 Position: 4832940 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 55.68% | 44.32% |
| All Indica | 795 | 82.52% | 17.48% |
| All Japonica | 477 | 11.32% | 88.68% |
| Aus | 60 | 51.67% | 48.33% |
| Indica I | 374 | 74.06% | 25.94% |
| Indica II | 211 | 88.15% | 11.85% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 83 | 45.78% | 54.22% |
| Japonica Intermediate | 59 | 23.73% | 76.27% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904832940 | G->C | INTERGENIC | None |