Detailed information of SNP:
|
SNP ID:
sf0904839774(Gbrowse)
Chromosome: chr09 Position: 4839774 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 98.27% | 1.73% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 465 | 96.34% | 3.66% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 98.70% | 1.30% |
| Tropical Japonica | 91 | 92.31% | 7.69% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904839774 | G->A | INTERGENIC | None |