Detailed information of SNP:
|
SNP ID:
sf0904940915(Gbrowse)
Chromosome: chr09 Position: 4940915 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 87.20% | 12.80% |
| All Indica | 796 | 94.97% | 5.03% |
| All Japonica | 495 | 82.02% | 17.98% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0904940915 | C->T | LOC_Os09g09220(LOC_Os09g09220.1) | Synonymous |