Detailed information of SNP:
|
SNP ID:
sf0905068340(Gbrowse)
Chromosome: chr09 Position: 5068340 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 85.95% | 14.05% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 494 | 61.94% | 38.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 75.45% | 24.55% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0905068340 | T->C | INTERGENIC | None |